Subsetting data and using the wrong indices
Read in files with numerical names in the wrong sort order (1,11,110,…)
Duplicated code
Duplicated code where one duplication is a little bit different than the other
Detecting the correct text coding of a file
Global variables
Script files with names which have absolutely nothing to do with their content
Variable names which have absolutely nothing to do with their purpose
Quick modifications of recursive functions
Time zones
Reading/Writing contents of PDF files
Assuming that someone will create required system setup that you need in your code (do it yourself!)
…